Table 3 Recombinant analysis using RDP4
From: Whole genome-based surveillance for human adenovirus-related diseases in Kobe City, Japan, 2018–2022
Breakpoint Positions | Detection Methods | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
9489 | 10,841 | 180,113 | AdV89_MH121097 | AdV5_AC_000008 | 2.75E-12 | 3.74E-07 | 2.68E-12 | 1.77E-03 | 1.91E-02 | NS | NS | NS | 1.23E-06 |
14,522 | 16,331 | 180,113 | AdV89_MH121097 | AdV5_AC_000008 | 2.05E-16 | NS | 5.35E-05 | NS | 1.57E-02 | NS | NS | NS | 2.31E-09 |
Breakpoint Positions | Detection Methods | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
1214 | 3520 | 180,140 | AdV89_MH121097 | AdV5_AC_000008 | 1.12.E-16 | 1.25.E-11 | 2.67.E-14 | 1.58.E-02 | 6.27.E-04 | NS | NS | NS | 1.12.E-02 |
13,724 | 15,977 | 180,140 | AdV89_MH121097 | AdV5_AC_000008 | 6.56.E-18 | NS | 1.20.E-04 | 4.14.E-02 | 6.99.E-03 | NS | NS | NS | 4.34.E-03 |
Breakpoint Positions | Detection Methods | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
1676 | 2720 | 190,136 | AdV89_MH121097 | AdV5_AC_000008 | 1.01.E-17 | 5.18.E-12 | 6.10.E-15 | 1.44.E-02 | 1.81.E-03 | NS | NS | NS | NS |
7313 | 11,516 | 190,136 | AdV89_MH121097 | AdV5_AC_000008 | 5.13.E-40 | NS | 1.15.E-17 | 6.97.E-05 | 1.22.E-05 | NS | NS | NS | 1.39.E-02 |
Breakpoint Positions | Detection Methods | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
9453 | 10,636 | 190,208 | AdV89_MH121097 | AdV5_AC_000008 | 8.51.E-09 | 3.75.E-07 | 2.70.E-12 | 2.82.E-02 | NS | NS | NS | NS | 1.23.E-06 |
14,522 | 16,331 | 190,208 | AdV89_MH121097 | AdV5_AC_000008 | 2.05.E-16 | NS | 5.37.E-05 | NS | NS | NS | NS | NS | 2.31.E-09 |
Breakpoint Positions | Detection Methods | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
690 | 3740 | 190,517 | AdV89_MH121097 | AdV5_AC_000008 | 1.02.E-21 | 2.03.E-16 | 6.02.E-18 | 2.34.E-04 | 7.73.E-03 | NS | NS | NS | 6.30.E-03 |
7480 | 11,562 | 190,517 | AdV89_MH121097 | AdV5_AC_000008 | 3.85.E-30 | NS | 2.05.E-17 | 4.43.E-07 | 3.06.E-03 | NS | NS | NS | 9.75.E-04 |
13,724 | 15,983 | 190,517 | AdV89_MH121097 | AdV5_AC_000008 | 9.10.E-19 | NS | 6.20.E-07 | 4.68.E-03 | 6.28.E-03 | NS | NS | NS | 3.43.E-12 |
16,739 | 16,913 | 190,517 | AdV89_MH121097 | AdV5_AC_000008 | 1.04.E-03 | 6.24.E-06 | 9.59.E-09 | NS | NS | NS | NS | NS | NS |