Table 2 Distributions of probes per cluster in the TAD and sliding window clusters
From: Using LDpred2 to adapt polygenic risk score techniques for methylation score creation
Window size | Probes clustered* | Min | Q1 | Q2 | Mean | Q3 | Max | p-value | Nagel- kerke R2 | AIC |
|---|---|---|---|---|---|---|---|---|---|---|
5kb | 74% | 1 | 1 | 2 | 2.31 | 3 | 91 | 1.88 × 10− 8 | 0.0361 | 1596.5 |
10kb | 78% | 1 | 1 | 2 | 2.50 | 3 | 119 | 1.83 × 10− 8 | 0.0361 | 1596.4 |
20kb | 81% | 1 | 1 | 2 | 2.71 | 3 | 119 | 1.85 × 10− 8 | 0.0362 | 1596.3 |
100kb | 85% | 1 | 1 | 2 | 3.03 | 4 | 119 | 1.85 × 10− 8 | 0.0362 | 1596.3 |
500kb | 86% | 1 | 1 | 2 | 3.09 | 4 | 119 | 1.84 × 10− 8 | 0.0361 | 1596.3 |
1Mb | 86% | 1 | 1 | 2 | 3.09 | 4 | 119 | 1.86 ×10− 8 | 0.0361 | 1596.3 |
TAD clusters | 99.99% | 1 | 45 | 82 | 118.46 | 138 | 2690 | 1.68 × 10− 8 | 0.0363 | 1596.2 |