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Table 2 Frequencies of CYP2D6 alleles among Malay Malaysians

From: Nanopore sequencing-based genotyping suggested an association between CYP2D6 function and susceptibility to anxiety and depression

CYP2D6 Allele

Count1 (Allele Frequency)

Activity Value

Remarks

Normal-function allele

*1

48 (0.253)

1.0

Wild-type allele

*2

17 (0.089)

Contains an expression-decreasing variant, 2850 C > T, whose effect is offset by two distant enhancer variants

*39

3 (0.016)

Defined by two variants also present in *2, 1661G > C and 4180G > C

Decreased-function allele

*10

84 (0.442)

0.25

Prevalent in Asian populations

*41

15 (0.079)

0.5

Decreases the level of full-length transcripts

Loss-of-function allele

*4

6 (0.032)

0

CYP2D6 protein truncated by erroneous splicing and frameshifting; a common defective allele in Caucasians

*5

15 (0.079)

Whole-gene deletion

Uncertain functional significance

*43

1 (0.005)

Unknown

A decreased-function allele that has not yet received an official CPIC activity value

*71

1 (0.005)

May be a poor-metabolizer allele, through its adverse effect on the insertion of the CYP2D6 protein into the membranes of endoplasmic reticulum

TOTAL

190 (1)

  1. 1One sample could not be genotyped
  2. Abbreviation: CPIC, Clinical Pharmacogenetics Implementation Consortium