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Table 1 Cancer gene census (CGC) variants in all COSMIC variants from DSMZ breast cancer cell lines

From: Refined variant calling pipeline on RNA-seq data of breast cancer cell lines without matched-normal samples

Cell line

Gene symbol

HGVSG

Mutation AA

Mutation description

BT-474

PIK3CA

3:g.179199158G C

p.K111N

Substitution - Missense

CAL-148

PTEN

10:g.87957976T A

p.I253N

Substitution - Missense

CAL-148

PTEN

10:g.87960984C T

p.Q298

Substitution - Nonsense

CAL-148

PIK3CA

3:g.179234297A G

p.H1047R

Substitution - Missense

CAL-51

PIK3CA

3:g.179218294G A

p.E542K

Substitution - Missense

DU-4475

APC

5:g.112840323G T

p.E1577

Substitution - Nonsense

EFM-19

PIK3CA

3:g.179234297A T

p.H1047L

Substitution - Missense

EVSA-T

PTEN

10:g.87961047_87961050del

p.T319

Deletion - Frameshift

EVSA-T

TP53

17:g.7674241G C

p.S241C

Substitution - Missense

MFM-223

PIK3CA

3:g.179234297A G

p.H1047R

Substitution - Missense

  1. All 10 CGC variants of the overlapping CGC breast cancer cell line variants were found by our pipeline. HGVSG and Mutation AA follow the Human Genome Variation Society (HGVS) nomenclature standard for genomic and protein/amino acid levels, respectively