On the ability to extract MLVA profiles of Vibrio cholerae isolates from WGS data generated with Oxford Nanopore Technologies

Table 3 Quality control metrics of ONT MinION and GridION long reads

ONT sequencing platform	Isolate	Number of reads	Length of reads min – max	median of reads length	Positions with median phred score > 10
MinION	CTMA-1426	190 186	69 − 63 195	1599	0.996
	CTMA-1427	87 929	70 − 43 611	1492	0.942
	CTMA-1432	112 216	68 − 61 372	759	0.985
	CTMA-1435	143 620	70 − 53 139	1444	0.990
	CTMA-1461	163 440	68–109 071	1612	0.978
	CTMA-1473	98 596	72–104 391	4162	0.989
	CTMA-1402	113 252	75 − 44 694	2098	0.989
	CTMA-1421	95 725	74 − 62 565	2604	0.991
	CTMA-1424	1 372 705	65–127 859	624	0.999
GridION	CTMA-1426	122 597	67 − 43 560	1840	0.993
	CTMA-1427	57 920	70 − 54 700	1764	0.982
	CTMA-1432	71 818	73 − 43 924	857	0.995
	CTMA-1435	93 995	69 − 63 410	1683	0.991
	CTMA-1461	10 6175	69 − 53 447	1869	0.995
	CTMA-1473	68 365	71 − 47 336	4593	0.996
	CTMA-1402	74 836	80 − 54 138	2450	0.995
	CTMA-1421	63 781	70–78 397	3095	0.999
	CTMA-1424	829 644	70–138 439	639	0.999

ISSN: 1756-0500