Table 1 Similarities/differences in ICE results between ICEfinder and comparative genomic analysis
Isolate | ICE base start to end [contig no.] by ICEfinder | ICE base start to end [contig no.] by CAGECAT | ICE base size by ICEfinder (bp) | ICE base size by CAGECAT (bp) |
|---|---|---|---|---|
UB2 | 244,514 to 294,228 [1] | 224,660 to 302,024 [1] | 49,715 | 77,365 |
UB7 | 244,883 to 294,618 [5] | 225,029 to 302,414 [5] | 49,736 | 77,386 |
UB15 | 854,622 to 902,726 [3] | 858,346 to 935,731 [3] | 48,105 | 77,386 |
UB23 | 577,061 to 640,616 [3] | 572,095 to 643,092 [3] | 63,556 | 70,998 |
UB25 | 820,660 to 868,764 [1] | 824,384 to 901,769 [1] | 48,105 | 77,386 |
UB36 | 244,515 to 294,250 [1] | 224,661 to 302,046 [1] | 49,736 | 77,386 |
UB37 | 818,668 to 866,772 [3] | 822,392 to 899,777 [3] | 48,105 | 77,386 |
UB38 | 818,651 to 866,755 [5] | 822,375 to 899,766 [5] | 48,105 | 77,392 |
UB41 | 244,729 to 294,464 [3] | 224,875 to 302,260 [3] | 49,736 | 77,386 |
UB56 | 819,593 to 867,697 [2] | 823,317 to 900,702 [2] | 48,105 | 77,386 |
UB58 | 244,515 to 294,250 [3] | 224,661 to 302,046 [3] | 49,736 | 77,386 |
UB63 | 781,903 to 830,007 [3] | 785,627 to 863,012 [3] | 48,105 | 77,386 |
UB68 | 789,597 to 874,926 [2] | 818,820 to 895,554 [2] | 85,330 | 76,735 |
UB77 | 576,689 to 657,436 [1] | 582,527 to 659,912 [1] | 80,748 | 77,386 |
UB78 | 771,598 to 857,048 [1] | 800,942 to 878,348 [1] | 85,451 | 77,407 |
UB81 | 244,514 to 294,249 [1] | 224,660 to 302,045 [1] | 49,736 | 77,386 |
UB82 | 819,632 to 867,736 [1] | 823,356 to 900,741 [1] | 48,105 | 77,386 |
UB85 | 789,395 to 874,724 [1] | 818,618 to 895,352 [1] | 85,330 | 76,735 |
UB89 | 815,907 to 864,011 [2] | 819,631 to 897,016 [2] | 48,105 | 77,386 |
UB92 | 188,482 to 268,578 [2] | 194,320 to 271,054 [2] | 80,097 | 76,735 |
UB97 | 819,497 to 867,601 [3] | 823,221 to 900,606 [3] | 48,105 | 77,386 |
UB99 | 817,430 to 870,565 [2] | 823,268 to 872,342 [2]* | 53,136 | > 49,075 |