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Fig. 2 | BMC Research Notes

Fig. 2

From: Characterization of integrative and conjugative elements carrying erm(B) and tet(O) resistance determinants in streptococcus uberis isolates from bovine milk in Chiba prefecture, Japan: CompArative GEne cluster analysis toolbox with ICEfinder

Fig. 2

Putative identification of other streptococcal Integrative and conjugative element (ICE) resembling S. uberis ICEs (UB37/UB68/UB23/UB99), with S. uberis NZ01 WGS. Similar/identical product comparisons between reference and candidate WGSs are shown in the same colors. Black gradations in interspace among the corresponding genes indicate percent identity. Another similar streptococcal ICE was Streptococcus suis strain STC78 ICEnsui78tet(O)–erm(B) mobile element (nucleotide accession no. ON944185.1), based on the similar product arrangements between UB37/UB68/UB23/UB99 ICEs and ICEnsui78. The core products are shown in red letters; the antimicrobial resistance products are shown in blue letters. We performed the re-annotation for ICEUB37 using a Prokaryotic Genomes Annotation Pipeline. To specify ICE components, ICEscreen was applied. To speculate protein function similarities, we used basic local alignment search tool x; the protein functions are shown in brackets

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