Table 1 Overview of data files/data sets

Data file 1

Methodology description

Document file (.docx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12902474.v1

Data file 2

Descriptive statistics of assembly-sequencing

Document file (.docx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12902474.v1

Data file 3

FigS1 Size_distribution

Image file (.jpg)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12902405.v2

Data file 4

FigS2 GeneOntology

Image file (.jpg)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12902405.v2

Data file 5

FigS3 Differential_expression

Image file (.jpg)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12902405.v2

Data file 6

Raw RNA‐seq. Reads Brain tissue

Fastq files (.fastq)

NCBI Sequence Read Archive

https://identifiers.org/insdc.sra:SRP151838

Data file 7

Raw RNA‐seq. Reads Muscle tissue

Fastq files (.fastq)

NCBI Sequence Read Archive

https://identifiers.org/insdc.sra:SRP151838

Data file 8

Trinity144

Fasta file (.fasta)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.7326464

Data file 9

Predicted non-redundant Open Reading Frames (ORFs)

Fasta file (.fasta)

NCBI GenBank https://identifiers.org/ncbi/insdc:GHGR00000000.1

Data file 10

Megablast hit aligment of non-redundant ORF unigenes to reference nucleotide databases

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.7712708.v4

Data file 11

Blastx homology search of non-redundant ORF unigenes to reference protein databases

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.7712708.v4

Data file 12

Krona_pie_chart_on_Non_redundant_ORF_to_NCBI_nt_and_rnaREF_seq_2018__HTML_html

HTML file (.html)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.7712708.v4

Data file 13

Protein family (Pfam) assignation to non-redundant ORF unigenes

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905777.v2

Data file 14

GOslim annotation of non-redundant ORF unigene sequences

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905777.v2

Data file 15

KEGG pathway annotation of non-redundant ORF unigene sequences

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905777.v2

Data file 16

Raw_Cufflinks_Brain_transcript_expression

Cufflinks output file (.txt)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905747.v1

Data file 17

Raw_Cufflinks_Muscle_transcript_expression

Cufflinks output file (.txt)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905747.v1

Data file 18

Raw_Cuffdiff_Brain_Muscle_transcript_differential_expression_testing

Cuffdiff output file (.txt)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905747.v1

Data file 19

Differentialy expressed non-redundant ORF unigenes at FDR_0.01

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905747.v1

Data file 20

Salmo trutta m. Fario—mapped SNP_to_ORF

Varian Call Format file (.vcf)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905831.v1

Data file 21

SNP context sequence

Spreadsheet (.xlsx)

Figshare https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12905831.v1