Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or Accession Number) |
|---|---|---|---|
Supplementary file 1 | Methodology description | Document file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Dataset 1 | Raw FASTQ files for the RNA-seq. of pig embryonic stem cells | Fastq files (.fastq) | NCBI Gene Expression Omnibus (GSE120031) |
Dataset 2 | List of normalized gene expression level (FPKM; ESCs and Embryos) | Spreadsheet (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Dataset 3 | Lists of differentially expressed genes (FC; ESCs and Embryos) | Spreadsheet (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Table S1 | Summary of cell samples for RNA-seq. | Spreadsheet (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Table S2 | Summary of alignment statistics for RNA-seq. | Spreadsheet (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Table S3 | Number of differentially expressed genes (DEGs) compared with fibroblasts | Spreadsheet (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Figure S1 | Quality assessment of raw FASTQ files | Document file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Figure S2 | Workflow of the transcriptome analysis and the results of comparative analysis | Document file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |
Figure S3 | Gene expression profiling in pig ESC lines and preimplantation embryos | Document file (.pdf) | Figshare ( https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.10298324.v2) |